2017 spring Course
<Bio-medicine Text Mining and Knowledge discovery>
研究生课程《生物医药文本挖掘和知识发现》
The aim of the course is to spread nLP tool and ideas in application of bioinformatics and knowledge discovery
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Outline oWeek 1: (20th, Feb) •Chapter 0. Introduction of BioNLP and This Course •Chapter 1. First Class of Linux and Lexicon Analysis -Alex's Case(教师Slides, download here.) oWeek 2: (27th, Feb) •Chances for earning points, 3 talks (8-10 mins for each) 李朝阳Presentation《Unique Words Analysis》 (Download the slides) 冯佳武Presentation《如何高效进行英语学习》(Download the slides) •Chapter *. Idea of this Course •Chapter 2. R programming & Word Cloud oWeek 3: (6th, Mar) •Chances for earning points, 3 talks (8-10 mins for each) 刘云霞Presentation 《The likelihood of success》 (Download the slides) 李姜Presentation《Spam? Ham》(Download the slides) •Chapter 3. Gene Ontology (Dataset and Text Retrieval and Ontology) oWeek 4: (13th, Mar) •Chances for earning points, 3 talks (8-10 mins for each) 彭晖Presentation《GO Enrichment Analysis》(Download the slides) 刘敏Presentation 《GO Enrichment Analysis》 (Download the slides) •Chapter 4. Side Effect and Human Phenotype Ontology (Case study for drug repurposing) HPO disease-gene-phenotype link ref (download here). oWeek 5: (20th, Mar) •Chances for earning points, 3 talks (8-10 mins for each) 王凯Presentation 《New uses of old drugs》 (Download the slides) 张戈Presentation 《The clues of drug repurposing》 (Download the slides) •Chapter 5. Clinical Trial and Its R package application (Download the slides) oWeek 6: (27th, Mar) •Chances for earning points, 3 talks (8-10 mins for each) 陈沫Presentation《Some exploration of epilepsy》(Download the slides) 周金枝Presentation《Something about epilepsy》(Download the slides) •Chapter 6. Event Extraction and Knowledge Discovery (A little bit Python coding and Parsing tree thing) Text data set 1: SE for salsalate (Download here.) Text data set 2: SE for viagra (Download here.) oWeek 7: (10th, Apr) •Chances for earning points, 3 talks (8-10 mins for each) 孙童凯Presentation《关系抽取与知识发现》(Download the slides) 阳旭Presentation《Analysis of Salsalate and Viagra outcome Texts》(Download the slides) •Chapter 7. Word2vec and Deep Learning (Quick view of ANN and Tensorflow framework for DL computing) 《Tensorflow and Deep learning》杨帆 《Word2vec》江荧荧 oWeek 8: (17th, Apr) •Chances for earning points, 2 talks (8-10 mins for each) 罗瀚Presentation《Word2vec分析》(Download the slides) •Conclusion Talk <History and Future of Bio Text Mining> |