Publication list (in Recent 5 years)
2020
◆ Youzhu Li, Huiling Zhou, Zhonglong Lin,Yifan Wang, Shunjie Chen, Chang Liu, Zhouyang Wang, Daniela Gifu, Jingbo Xia*. Investigation in the influences of public opinion indicators on vegetable prices by corpora construction and WeChat artical analysis. Future Generation Computer Systems. 2020, 102: 876-888. (This is a joint research under collaboration with Dr. Youzhu Li's team, which works on corpora construction and social media mining.)
2019
◆ Zhang, Silan, and Jingbo Xia. Algebraic Fundamentals in Artificial Intelligence for the Purpose of Undergraduate Education and Training. In Journal of Physics: Conference Series, vol. 1302, no. 3, p. 032021. IOP Publishing, 2019.
◆ Yuxing Wang, Kaiyin Zhou, Jin-Dong Kim, Kevin Cohen, Mina Gachloo, Yuxin Ren, Shanghui Nie, Xuan Qin, Panzhong Lu, Jingbo Xia*. An Active Gene Annotation Corpus and Its Application on Anti-epilepsy Drug Discovery. BIBM 2019: International Conference on Bioinformatics & Biomedicine, San Diego, U.S, Nov, 2019. (This is a research which publicizes AGAC, a mutation-centric corpus in the support of drug knowledge discovery)
◆ Yuxing Wang, Kaiyin Zhou, Mina Gachloo, Jingbo Xia*. An Overview of the Active Gene Annotation Corpus and the BioNLP OST 2019 AGAC Track Tasks. BioNLP Open Shared Task 2019, Hong Kong. (This is a research which makes AGAC as the gold set in an open shared task)
◆ Shuguang Wang, Xiang-Yu Meng, Yuxing Wang, Yemao Liu, Jingbo Xia*. HPO-Shuffle, An Associated Gene Prioritization Strategy and Its Application in Drug Repurposing for the Treatment of Canine Epilepsy. Bioscience Reports, 2019.
◆ Mina Gachloo, Yuxing Wang, Jingbo Xia*. Drug Knowledge Discovery by Using BioNLP and Tensor or Matrix Decomposition. Genomics and Informatics, 2019, 17(2): e18.
◆ Kaiyin Zhou, Yuxing Wang, Sheng Zhang, Mina Gachloo, Jin-Dong Kim, Qi Luo, Kevin Bretonnel Cohen, Jingbo Xia*. GOF/LOF Knowledge Inference with Tensor Decomposition in Support of High order Link Discovery for Gene, Mutation and Disease. Mathematical Biosciences and Engineering, 2019, 16(3):1376-1391.
◆ Alex Chengyu Fang, Yemao Liu, Yaping Lu, Jing Cao, Jingbo Xia*. A Corpus-Oriented Perspective on Terminologies of Side Effect and Adverse Reaction in Support of Text Retrieval for Drug Repurposing. the International Journal of Data Mining and Bioinformatics. 2018, 21(3): 269-286
◆ Yuxing Wang, Xinzhi Yao, Kaiyin Zhou, Xuan Qin, Jin-Dong Kim, Kevin Bretonnel Cohen, Jingbo Xia*. Guideline Design of an Active Gene Annotation Corpus for the Purpose of Drug Repurposing. 2018 11th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics(CISP-BMEI 2018), pp.1-5, Oct, 2018, Beijing.
◇ Daniela Gîfu, Diana Trandabăț, Kevin Cohen, Jingbo Xia. Special Issue on the Curative Power of Medical Data. Data, 2019, 4(2), 85; https://doi.org/10.3390/ data4020085.
2018
◆ Kaiyin Zhou, Zhang Sheng, Xiangyu Meng, Qi Luo, Yuxing Wang, Ke Ding, Yukun Feng, Mo Chen, Kevin B Cohen, Jingbo Xia*. CRF-LSTM Text Mining Method Unveiling the Pharmacological Mechanism of Off-target Side Effect of Anti-Multiple Myeloma Drugs. BioNLP 2018, workshop in ACL 2018. Melbourne, Australia, pp.166-171.
◆ Kaiyin Zhou, Xinzhi Yao, Shuguang Wang, Jin-Dong Kim, Kevin Bretonnel Cohen, Ruiying Chen, Yuxing Wang and Jingbo Xia*. Trigger Words Detection by Integrating Attention Mechanism into Bi-LSTM Neural Network --- A Case study in PubMED-wide Trigger Words Detection for Pancreatic Cancer. CCL & NLP-NABD 2018. LNAI 11221, pp. 398–409, 2018. (Link to the paper). (Slides)
◆ Xuan Qin, Shuguang Wang, Yongze Wu, Jingbo Xia*. Evaluation of the Performance of BioNLP Tools for Discovering Causal Genes in Terms with Pathway Enrichment. Journal of Physics, Conf series. 2018, 1069: 012037.
◆ Panzhong Lu, Hanyi Zhang, Ying Liu, Yongze Wu, Xuan Qin and Jingbo Xia*. Parameter Searching in Attractor Algorithm for Community Detection —An Application in Pathway Enrichment Analysis. Journal of Physics, Conf series. 2018, 1069: 012051.
◇ Gifu Daniela, Diana Trandabat, Kevin Bretonnel Cohen, and Jingbo Xia. The Curative Power of Medical Data. In Proceedings of the 18th ACM/IEEE on Joint Conference on Digital Libraries, pp. 431-432. ACM, 2018.
◇ Kevin B Cohen, Jingbo Xia, Pierre Zweigenbaum, Tiffany Callahan, Foster Goss, Nancy Ide, Aurélie Névéol, Cyril Grouin, Lawrence E. Hunter.Three Dimensions of Reproducibility in Natural Language Processing. In LREC International Conference on Language Resources & Evaluation, vol. 2018, pp. 156. NIH Public Access, 2018.
2017
◆ Kaiyin Zhou, Xing Zhang, Pierre Zweigenbaum, Ruiqing Liang, Yingying Jiang, Jingbo Xia*. Adverse Reaction Identification Driven by Semantic Information. The annual Text Analysis Conference 2017 (TAC2017), Nov., 2017, Gaithersburg, Maryland, USA. (Accepted)
◆ Ze-Jia Cui#, Ye-Mao Liu#, Qiang Zhu, Jingbo Xia*, Hong-Yu Zhang. Exploring the Pathogenesis of Canine Epilepsy Using a Systems Genetics Method and Implications for Anti-Epilepsy Drug Discovery. Oncotarget, 2017 (https://doi.org/10.18632/oncotarget.23719)
◆ Tianyi Liu, Xuan Qin, Danbing Zou, Zhen Yu, Yingying Jiang, Jingbo Xia*. The Strategy of Reproducing Database-based Knowledge by Using Text Mining System. The Second CCF Bioinformatics Conference (CBC 2017), Oct, 2017, Changsha, China. (Poster)
◆ Xiaolei Zuo, Silan Zhang, Jingbo Xia*. The Enhancement of TextRank Algorithm by Using Word2vec and Its application on Topic Extraction. 2nd Annual International Conference on Information System and Artificial Intelligence, ISAI 2017, July, 2017, Tianjin, China. (Ed in Journal of Physics, Conf series. 2017(887): 012028.) doi :10.1088/1742-6596/887/1/012028.
◇ Kevin Bretonnel Cohen, Aurélie Névéol, Jingbo Xia, Negacy Hailu, Cyril Grouin, Lawrence Hunter, Pierre Zweigenbaum. Reproducibility in Biomedical Natural Language Processing. AMIA, 2017. (Accepted)
2016
◇ Kevin Cohen, Jingbo Xia, Christophe Roeder and Lawrence Hunter. Reproducibility in natural language processing: A case study of two R libraries for mining PubMed/MEDLINE. Workshop on Research Results Reproducibility and Resources Citation in Science and Technology of Language, Collocated with LREC2016 – 10th Language Resources and Evaluation Conference. Portorož, Slovenia. 2016 (Accepted) (http://4real.di.fc.ul.pt/)
Full list of publications, check here -->.
◆ Youzhu Li, Huiling Zhou, Zhonglong Lin,Yifan Wang, Shunjie Chen, Chang Liu, Zhouyang Wang, Daniela Gifu, Jingbo Xia*. Investigation in the influences of public opinion indicators on vegetable prices by corpora construction and WeChat artical analysis. Future Generation Computer Systems. 2020, 102: 876-888. (This is a joint research under collaboration with Dr. Youzhu Li's team, which works on corpora construction and social media mining.)
2019
◆ Zhang, Silan, and Jingbo Xia. Algebraic Fundamentals in Artificial Intelligence for the Purpose of Undergraduate Education and Training. In Journal of Physics: Conference Series, vol. 1302, no. 3, p. 032021. IOP Publishing, 2019.
◆ Yuxing Wang, Kaiyin Zhou, Jin-Dong Kim, Kevin Cohen, Mina Gachloo, Yuxin Ren, Shanghui Nie, Xuan Qin, Panzhong Lu, Jingbo Xia*. An Active Gene Annotation Corpus and Its Application on Anti-epilepsy Drug Discovery. BIBM 2019: International Conference on Bioinformatics & Biomedicine, San Diego, U.S, Nov, 2019. (This is a research which publicizes AGAC, a mutation-centric corpus in the support of drug knowledge discovery)
◆ Yuxing Wang, Kaiyin Zhou, Mina Gachloo, Jingbo Xia*. An Overview of the Active Gene Annotation Corpus and the BioNLP OST 2019 AGAC Track Tasks. BioNLP Open Shared Task 2019, Hong Kong. (This is a research which makes AGAC as the gold set in an open shared task)
◆ Shuguang Wang, Xiang-Yu Meng, Yuxing Wang, Yemao Liu, Jingbo Xia*. HPO-Shuffle, An Associated Gene Prioritization Strategy and Its Application in Drug Repurposing for the Treatment of Canine Epilepsy. Bioscience Reports, 2019.
◆ Mina Gachloo, Yuxing Wang, Jingbo Xia*. Drug Knowledge Discovery by Using BioNLP and Tensor or Matrix Decomposition. Genomics and Informatics, 2019, 17(2): e18.
◆ Kaiyin Zhou, Yuxing Wang, Sheng Zhang, Mina Gachloo, Jin-Dong Kim, Qi Luo, Kevin Bretonnel Cohen, Jingbo Xia*. GOF/LOF Knowledge Inference with Tensor Decomposition in Support of High order Link Discovery for Gene, Mutation and Disease. Mathematical Biosciences and Engineering, 2019, 16(3):1376-1391.
◆ Alex Chengyu Fang, Yemao Liu, Yaping Lu, Jing Cao, Jingbo Xia*. A Corpus-Oriented Perspective on Terminologies of Side Effect and Adverse Reaction in Support of Text Retrieval for Drug Repurposing. the International Journal of Data Mining and Bioinformatics. 2018, 21(3): 269-286
◆ Yuxing Wang, Xinzhi Yao, Kaiyin Zhou, Xuan Qin, Jin-Dong Kim, Kevin Bretonnel Cohen, Jingbo Xia*. Guideline Design of an Active Gene Annotation Corpus for the Purpose of Drug Repurposing. 2018 11th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics(CISP-BMEI 2018), pp.1-5, Oct, 2018, Beijing.
◇ Daniela Gîfu, Diana Trandabăț, Kevin Cohen, Jingbo Xia. Special Issue on the Curative Power of Medical Data. Data, 2019, 4(2), 85; https://doi.org/10.3390/ data4020085.
2018
◆ Kaiyin Zhou, Zhang Sheng, Xiangyu Meng, Qi Luo, Yuxing Wang, Ke Ding, Yukun Feng, Mo Chen, Kevin B Cohen, Jingbo Xia*. CRF-LSTM Text Mining Method Unveiling the Pharmacological Mechanism of Off-target Side Effect of Anti-Multiple Myeloma Drugs. BioNLP 2018, workshop in ACL 2018. Melbourne, Australia, pp.166-171.
◆ Kaiyin Zhou, Xinzhi Yao, Shuguang Wang, Jin-Dong Kim, Kevin Bretonnel Cohen, Ruiying Chen, Yuxing Wang and Jingbo Xia*. Trigger Words Detection by Integrating Attention Mechanism into Bi-LSTM Neural Network --- A Case study in PubMED-wide Trigger Words Detection for Pancreatic Cancer. CCL & NLP-NABD 2018. LNAI 11221, pp. 398–409, 2018. (Link to the paper). (Slides)
◆ Xuan Qin, Shuguang Wang, Yongze Wu, Jingbo Xia*. Evaluation of the Performance of BioNLP Tools for Discovering Causal Genes in Terms with Pathway Enrichment. Journal of Physics, Conf series. 2018, 1069: 012037.
◆ Panzhong Lu, Hanyi Zhang, Ying Liu, Yongze Wu, Xuan Qin and Jingbo Xia*. Parameter Searching in Attractor Algorithm for Community Detection —An Application in Pathway Enrichment Analysis. Journal of Physics, Conf series. 2018, 1069: 012051.
◇ Gifu Daniela, Diana Trandabat, Kevin Bretonnel Cohen, and Jingbo Xia. The Curative Power of Medical Data. In Proceedings of the 18th ACM/IEEE on Joint Conference on Digital Libraries, pp. 431-432. ACM, 2018.
◇ Kevin B Cohen, Jingbo Xia, Pierre Zweigenbaum, Tiffany Callahan, Foster Goss, Nancy Ide, Aurélie Névéol, Cyril Grouin, Lawrence E. Hunter.Three Dimensions of Reproducibility in Natural Language Processing. In LREC International Conference on Language Resources & Evaluation, vol. 2018, pp. 156. NIH Public Access, 2018.
2017
◆ Kaiyin Zhou, Xing Zhang, Pierre Zweigenbaum, Ruiqing Liang, Yingying Jiang, Jingbo Xia*. Adverse Reaction Identification Driven by Semantic Information. The annual Text Analysis Conference 2017 (TAC2017), Nov., 2017, Gaithersburg, Maryland, USA. (Accepted)
◆ Ze-Jia Cui#, Ye-Mao Liu#, Qiang Zhu, Jingbo Xia*, Hong-Yu Zhang. Exploring the Pathogenesis of Canine Epilepsy Using a Systems Genetics Method and Implications for Anti-Epilepsy Drug Discovery. Oncotarget, 2017 (https://doi.org/10.18632/oncotarget.23719)
◆ Tianyi Liu, Xuan Qin, Danbing Zou, Zhen Yu, Yingying Jiang, Jingbo Xia*. The Strategy of Reproducing Database-based Knowledge by Using Text Mining System. The Second CCF Bioinformatics Conference (CBC 2017), Oct, 2017, Changsha, China. (Poster)
◆ Xiaolei Zuo, Silan Zhang, Jingbo Xia*. The Enhancement of TextRank Algorithm by Using Word2vec and Its application on Topic Extraction. 2nd Annual International Conference on Information System and Artificial Intelligence, ISAI 2017, July, 2017, Tianjin, China. (Ed in Journal of Physics, Conf series. 2017(887): 012028.) doi :10.1088/1742-6596/887/1/012028.
◇ Kevin Bretonnel Cohen, Aurélie Névéol, Jingbo Xia, Negacy Hailu, Cyril Grouin, Lawrence Hunter, Pierre Zweigenbaum. Reproducibility in Biomedical Natural Language Processing. AMIA, 2017. (Accepted)
2016
◇ Kevin Cohen, Jingbo Xia, Christophe Roeder and Lawrence Hunter. Reproducibility in natural language processing: A case study of two R libraries for mining PubMed/MEDLINE. Workshop on Research Results Reproducibility and Resources Citation in Science and Technology of Language, Collocated with LREC2016 – 10th Language Resources and Evaluation Conference. Portorož, Slovenia. 2016 (Accepted) (http://4real.di.fc.ul.pt/)
Full list of publications, check here -->.
