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Jingbo Xia

Ph.D., Associate Professor of Department of Big Data Science, College of Informatics, Hubei Key Laboratory of Agricultural Bioinformatics, Huazhong Agricultural University.

Address: 1#, Lion Rock Street, Wuhan, Hongshan district, Hubei, 430070, P.R. China

Email: xiajingbo.math@gmail.com or  xjb@mail.hzau.edu.cn

ResearchID : E-6796-2011
ORCID: http://orcid.org/0000-0002-7285-588X
Google scholar: click here.

Contact me

News:

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>>>Let's congrats the accepted project by BLAH6, DBCLS, Japan, "Plant Trait Ontology Mapping of 2.1k Literature". (Dec, 2019)
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>>>Many thanks to Dr. Bingxiang Yang , under whose invitation, Jingbo visited the lab in Wuhan University and introduced our work on "Biomedical Text Mining". (Nov, 2019)
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>>>Many thanks to Prof. Chen Li , under whose invitation, Jingbo visited the lab in Xi'an Jiaoda University and introduced our recent work on "Data synchronization of mutations". (Nov, 2019)
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>>>Congrates Yuyu Zheng for her newly accepted paper in CHIP 2019. (Nov, 2019)
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>>>Frontier in NLP and Big Data Workshop in Wuhan, 2019 was successfully held in HZAU. Thank you for coming! The slides of talk are available here. (11, Nov, 2019) ​
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>>>Let's welcome Dr. Jin-Dong Kim from DBCLS, Japan to pay a one-week-long visit to our lab. (Nov, 2019) 
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>>>Let's welcome Dr. George Paliouras and George Katsimpras from NCSR Demokritos, Greece to pay a ~20-days-long visit to our lab. (Nov, 2019) 
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>>>Let's welcome Prof. Pierre Zweigenbaum from LIMSI, France to pay a 20-days-long visit to our lab. (Oct, 2019) 
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>>>Congrats Yuxing Wang for her newly accepted paper, "An Active Gene Annotation Corpus and Its Application on Anti-epilepsy Drug Discovery" in BIBM 2019. (Oct, 2019)
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>>>Many thanks to Dr. Yong Zhang, under whose invitation Jingbo gave a talk on "corpus construction and knowledge mining" at Jishou University. (Sep, 2019)
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>>>Congrats Shuguang Wang for his newly published paper, "HPO-shuffle, an Associated Gene Prioritization Strategy and Its Application in Drug Repurposing for the Treatment of Canine Epilepsy" in Bioscience Report. (Link) (Aug, 2019)
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>>>Congrats Xuan Qin for the graduation. Let's say goodbye and make best wishes for her. (Jun, 2019)
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>>>Many thanks to Dr. Guosheng Han, under whose invitation Jingbo gave AGAC talk in Han's bioinformatics lab at Xiangtan University (XTU). (May, 2019)
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>>>Welcome Xinzhi Yao join the HZAU-BioNLP lab. (Apr, 2019)
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>>>Many thanks for Prof. Xiaohui Yuan, under whose invitation Jingbo gave AGAC talk in Yuan's bioinformatics lab at Wuhan University of Technology (WUT). (Mar, 2019)
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>>> Welcome to participate AGAC track in BioNLP OST 2019. The task is made public in https://sites.google.com/view/bionlp-ost19-agac-track/home. (Mar, 2019)
Image address: Click.
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>>>Thank Inderscience Publishers for the promotion of our recent research. "Searching for side effects (click to open)." (Feb, 2019)
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>>>Jingbo attends BLAH5, Kashiwa City, JP,  to introduce AGAC among BioNLP community. (Feb, 2019)
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>>>Congrats AGAC for being accepted as a corpus candidate for BioNLP-OST 2019, a joint workshop of EMNLP, Nov, 2019, Hong Kong. (Jan, 2019)
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>>>Thank Dr. De Wang, from Argo AI, to introduce unsupervised learning in transduction. (Dec, 2018)
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>>>Thank Sheng Zhang for preparing the poster for CHIP2018, Shenzhen. (Nov, 2018)
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>>>A "Joint CityU-HZAU Workshop on Language and Information Science" was successfully held in City University of Hong Kong, MSI, Shenzhen. (Nov, 2018) (Pic)
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>>>Thank you for attending the Frontier in Data Science and NLP Workshop in Wuhan, 2018 and making it a successful one. (Oct, 2018)
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>>>Welcome you to take part in the Frontier in Data Science and NLP Workshop in Wuhan, 2018. (Download poster.) (Oct, 2018)
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>>>Let's welcome Dr. Kevin Bretonnel Cohen, from University of Colorado at Denver, AMC, to pay a one-month visit to my lab. (Oct, 2018)
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>>>End of the 2018 Summer seminar (2018/6/11~2018/10/20). 2018 Winter seminar gets started. Will work for unfinished manuscripts, and mainly focus on AGAC-based knowledge discovery.(20th, Oct, 2018)
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>>>Let's welcome Dr. Jin-Dong Kim, from DBCLS, Tokyo, Japan, to pay a two-week visit to my lab. (Oct, 2018)
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>>>Graduates course <Data mining> gets started, welcome to select or audit this course. The course will cover main theorems including SVM, convex optimization, BP mechanism of ANN, and some trends in DL for NLP. (Sep, 2018)
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>>> Let's welcome Dr. Kirk E Roberts, from University Texas at Houston Health Science Center, to pay a 10-day-visit to our lab. Thank him for the BioNLP Shared task talk and Word embedding mini-course. (Aug, 2018)
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>>> Let's congrats Kaiyin for the acceptance of his work on a novel Attention Networks with encoder/decoder mechanism, by the 17th China National Conference on Computational Linguistics, CCL 2018. (July, 2018) 
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>>> Let's welcome Prof. Lars J Jensen, from Copenhagen University, to visit our lab in the middle of June. Thank him for the EHR report and STRING workshop. (June, 2018) 
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>>> End of the 2017 Winter seminar (2017/11/1~2018/6/10). 2018 Summer seminar gets started. Will work for some shared tasks and several publications. Welcome to join or audit. (10th, June, 2018)
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>>> Congrates Kaiyin for acceptance of the off-target work by BioNLP2018. (May, 2018)
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>>> Congrates Feng's TextRank-SIG for being funded with a Campus-wide "Guochuang /国创" Research Grant for Students. (May, 2018) 
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>>> Congrates Yao for getting the second position in the 2018 Intramural Bioinformatic Competition of HZAU. (News report here). (Apr, 2018) 
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>>> Welcome Mina Gachloo join my group. (Apr, 2018)
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>>> Welcome Yuxing Wang join my group. (Mar, 2018)

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>>> CFP: 2nd Workshop on Curative Power of Medical DAta (MEDA 2018), Fort Worth, U.S., June, 2018 (Mar, 2018)
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>>> Welcome to 2018 Spring Course for Bio Text Mining. (Mar, 2018)
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>>> CFP: BioNLP18, Melbourne, July 19, Australia. (Click for CFP.)
 (Feb, 2018)
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>>> Jingbo introduced the idea of AGAC corpus in BLAH4, Kashiwa-City. (Jan, 2018)
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>>> Frontier in BioNLP workshop in Wuhan 2017 is successfully held in HZAU. (Dec, 2017)
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>>>Frontier of BioNLP Workshop will be held in this Saturday, 16/12, 2017. (Click to download the file) (Dec, 2017)
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>>>Welcom Dr. Kevin, from Colorado Univ, and Dr. Daniela from University of Alexandru Loan Cuz, to take a two-week visit to my group. (Dec, 2017)

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>>> Welcome Prof. Alex, from City University of Hongkong, to take a two-week visit to my group. (Dec, 2017)
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>>> Welcome Dr. Jin-dong Kim, from Japan state-run Database center for life science ROIS and Korean top institue KAIST, to take a two-week visit to my lab. Tomorrow's talk <
PubAnnotation for Producing and Sharing Multi-Layer Annotations to Scientific Literature -- with a case study of text mining for rare disease diagnosis> will be very informative and instructive. (Nov, 2017)
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>>> Congrats to Danbing for getting poster acceptance from CCF Bioinformatic conference (CBC 2017, Changsha).  (Nov, 2017)
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>>> End of the 2017 May~Oct seminar. 2017 Winter seminar get started. Will work for several publications. Welcome to join or audit. (1st, Nov, 2017) 
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>>> Thank Prof. Pierre from LIMSI, France for his three-week visit to the lab, as well as his awesome course in "Supervised learning in Medical NLP" (Oct, 2017)
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>>> Sue and Kaiyin took part in the CCKS 2017 conf.  (Aug, 2017)
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>>> Jingbo gave mini course <Data Mining> for visiting students from ZZU. (Slides) (Aug, 2017)
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>>> Jingbo participated ISAI2017 and gave an oral presentation upon: 
TextRank, Word2Vec and Its application on Topic Extraction. (Jul, 2017) ​
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>>> Welcome Kaiyin Zhou to join in my group. (Jul, 2017) ​
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>>> My 2017 seminar get started. Welcome to join in the seminar and discuss BioNLP. (Jun, 2017) ​
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>>> My 2016 seminar (Aug, 2016~ May, 2017) got finished. Thank you, young friends. (May, 2017) ​
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​>>> Dr. Xia participated the OHDSI China workshop in GDUFS, Guangzhou, and met Dr. Tianyong Hao, Dr. Xien Liu and Dr. Maggie Xing Zhang. (May, 2017)
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>>>  Bio text mining for 2017 Spring get started, welcome! Here. (Feb, 2017)
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>>> Thank Dr. Kevin from Colorado Denver AMC for the two weeks visit, with the cooperation in BioNLP. (Nov, 2016)
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>>> Thank Prof. Larry from Colorado Denver AMC for the visit, with the cooperation in BioNLP. ( Oct, 2016)
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>>> Thank Dr. Xien Liu from Qsinghua gave a talk about word2vec and NLP research. (Oct, 2016)
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>>> Jingbo gave talk about associate study of SNP and phenotype and usage of text data at Wuhan University, under the invitation of Dr. Zhang. (Sep, 2016)
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>>> Thank Dr. De Wang, researcher from UTA, for giving talk about deep learning at HZAU. (Aug, 2016)
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>>> Jingbo gave talk about semantic network at Jinan University, Guangdong, China, under the invitation of Prof. Liang. (July, 2016)
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>>> Thank Alex for giving course to graduate students here in HZAU. (2016.7.1)

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>>> Jingbo invited Dr. Wen Zhang to the lab to give talk in Drug and Side effect detection. (April, 2016)

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About me:

Professional History:
   
​    Associate Professor, Huazhong Agricultural University, Wuhan, P.R. China, 2008-Present
    Visiting Scientist, University of Colorado Denver, Anschutz Medical Campus, U.S., 2015
    Visiting Scholar, The University of Texas at Arlington, U.S., 2015
    Research Fellow, City University of Hong Kong, Hong Kong, 2012
    Lecturer, Huazhong Agricultural University, Wuhan, P.R. China, 2006-2008
    Ph. D student, Wuhan University, Wuhan, P.R. China, 2001-2006


Academic Experiences: 
Registered reviewer for

    Mathematical Reviews ®
    Bentham science publisher, 
    Journal of Theoretical Biology, 
    Journal of Math (Chinese edition),
    Journal of Mathematics Research;


Research Interests:    
    Various interests in Data mining, Bioinformatics, BioNLP (Biomedical natural language process), Artificial intelligence,  Applied mathematics method and Diophantine equations 












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Logo of the Group
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                                     Designed by Mina Gachloo







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​Students in the group

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Xuan Qin
秦璇
Research direction: Bioinformatics

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Kaiyin Zhou
周开银
Research direction: BioNLP
GitHub, Blog, Pages
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Yuxing Wang
王宇星
Research direction:
BioNLP
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Mina Gachloo
米娜
Research direction:
​Data mining
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Xinzhi Yao
姚昕智
Researc direction: 
BioNLP
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Panzhong Lu
卢攀忠
Research direction:
​data mining
Blog
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Ke Ding
丁可
Research direction:
​BioNLP
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Shuguang Wang
王曙光
Research direction:
​Bioinformatics
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Hanyi Zhang
章涵艺
Research direction:
​Data mining
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Sheng Zhang
章胜
Research direction:
NLP
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