Spring 2016. 
Bio-medicine Text Mining and Knowledge discovery

Course Schedule:
​Week 1:
  (19, Apr) Ch1. Introduction (slides)
  (22, Apr) Ch2. Foundation Of Mathematical Algorithm (Slides) (Assignment)
Week 2:
  (26, Apr) Ch3. Foundation Of Linguistics (Slides)
  (29, Apr) Ch4. Dataset And Text Retrieval (Slides) (Assignment)
Week 3:
  (10, May) Ch5. Case Study I. Text Classification (Slides)
  (13, May) Ch6. Case Study II. NER (Slides)
Week 4:
  (17, May) Ch7. _Case Study III. Semantic Relation Mining (Slides)
  (20, May) Ch8. Case Study IV. Entity and Semantic
Week 5:
  (24, May) Ch9. Discussion I (Group Discussion)
  (27, May) Ch10. Case Study V. Clinic Info & Pheno-Genotype TM
Week 6:
  (31, May) Ch11. Case Study VI: Corpus-Based Method
  (3, Jun)    Ch12. Discussion II (Conclusion Discussion)

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References:
[1] Langedijk, J., Mantel-Teeuwisse, A. K., Slijkerman, D. S., & Schutjens, M. H. D. (2015). Drug repositioning and repurposing: terminology and definitions in literature. Drug discovery today. (For group discussion)
[2] Huang, C. C., & Lu, Z. (2015). Community challenges in biomedical text mining over 10 years: success, failure and the future. Briefings in bioinformatics, bbv024. (For Group Discussion, choose one from 2, 3.)
[3] Hirschberg, J., & Manning, C. D. (2015). Advances in natural language processing. Science, 349(6245), 261-266. (For Group Discussion, Choose one from 2, 3.)
[4] Zhang, W., Zou, H., Luo, L., Liu, Q., Wu, W., & Xiao, W. (2015). Predicting potential side effects of drugs by recommender methods and ensemble learning. Neurocomputing. (For Group Discussion, choose one from 4, 5.)
[5] Patki, A., Sarker, A., Pimpalkhute, P., Nikfarjam, A., Ginn, R., O’Connor, K., ... & Gonzalez, G. (2014). Mining adverse drug reaction signals from social media: going beyond extraction. Proceedings of BioLinkSig, 2014. (For Group Discussion, Choose one from 4, 5.)
[6] Hao, T., Chen, X., & Huang, G. (2015). Discovering Commonly Shared Semantic Concepts of Eligibility Criteria for Learning Clinical Trial Design. InAdvances in Web-Based Learning–ICWL 2015 (pp. 3-13). Springer International Publishing. (For Group Discussion)
[7] Wang, Z. Y., &Zhang, H. Y. (2013). Rational drug repositioning by medical genetics. Nature biotechnology, 31(12), 1080-1082. (For Group Discussion)