Spring 2016. Bio-medicine Text Mining and Knowledge discovery
Course Schedule: Week 1: (19, Apr) Ch1. Introduction (slides) (22, Apr) Ch2. Foundation Of Mathematical Algorithm (Slides) (Assignment) Week 2: (26, Apr) Ch3. Foundation Of Linguistics (Slides) (29, Apr) Ch4. Dataset And Text Retrieval (Slides) (Assignment) Week 3: (10, May) Ch5. Case Study I. Text Classification (Slides) (13, May) Ch6. Case Study II. NER (Slides) Week 4: (17, May) Ch7. _Case Study III. Semantic Relation Mining (Slides) (20, May) Ch8. Case Study IV. Entity and Semantic Week 5: (24, May) Ch9. Discussion I (Group Discussion) (27, May) Ch10. Case Study V. Clinic Info & Pheno-Genotype TM Week 6: (31, May) Ch11. Case Study VI: Corpus-Based Method (3, Jun) Ch12. Discussion II (Conclusion Discussion)
References:  Langedijk, J., Mantel-Teeuwisse, A. K., Slijkerman, D. S., & Schutjens, M. H. D. (2015). Drug repositioning and repurposing: terminology and definitions in literature. Drug discovery today. (For group discussion)  Huang, C. C., & Lu, Z. (2015). Community challenges in biomedical text mining over 10 years: success, failure and the future. Briefings in bioinformatics, bbv024. (For Group Discussion, choose one from 2, 3.)  Hirschberg, J., & Manning, C. D. (2015). Advances in natural language processing. Science, 349(6245), 261-266. (For Group Discussion, Choose one from 2, 3.)  Zhang, W., Zou, H., Luo, L., Liu, Q., Wu, W., & Xiao, W. (2015). Predicting potential side effects of drugs by recommender methods and ensemble learning. Neurocomputing. (For Group Discussion, choose one from 4, 5.)  Patki, A., Sarker, A., Pimpalkhute, P., Nikfarjam, A., Ginn, R., O’Connor, K., ... & Gonzalez, G. (2014). Mining adverse drug reaction signals from social media: going beyond extraction. Proceedings of BioLinkSig, 2014. (For Group Discussion, Choose one from 4, 5.)  Hao, T., Chen, X., & Huang, G. (2015). Discovering Commonly Shared Semantic Concepts of Eligibility Criteria for Learning Clinical Trial Design. InAdvances in Web-Based Learning–ICWL 2015 (pp. 3-13). Springer International Publishing. (For Group Discussion)  Wang, Z. Y., &Zhang, H. Y. (2013). Rational drug repositioning by medical genetics. Nature biotechnology, 31(12), 1080-1082. (For Group Discussion)
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